PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G28390.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 594aa    MW: 65053.8 Da    PI: 5.3519
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G28390.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.1e-12375422355
                   HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                   ++h + ErrRR+++N+ f  L++++P+        K++Ka+iL +++ Y+k+L+
  OB04G28390.1 375 KNHVMSERRRREKLNEMFLILKSVVPSiH------KVDKASILAETIAYLKELE 422
                   5899***********************66......****************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.0E-5313195IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.859372421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.88E-15375426No hitNo description
SuperFamilySSF474591.05E-17375439IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-10376422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-17376431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-15378427IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MEEPLLPSGN NFRSKLAAAV RSINWTYAIF WSISTSRPGV LTWKDGFYNG EIKTRKITNS  60
RNLTADELVL QRSEQLRELY DSLLSGECDH RARRPPAALS PEDLADTEWY YVICMTYAFR  120
PGQGLPGKSF ASNEFVWLSN AHSADRKTFQ RVLIAKSASI KTILCVPFMH GVLELGTTDP  180
VSEDAALVDR IAASFGEEPS SIPPSNDEAG DADVVFEDLD HADTVEAMVP GERRDELGLR  240
EVAECGSNAL DLEQITMEIG ELYGFCEELD DVGRSLEDSS WAAAVDPWSF QLVPTSSSPE  300
AARAATVVAL DGRFVDGSCR SSSCFVAWKR TGSDEVAVPF AGGESQRLLK KAVAGGGWVN  360
NGDGAAVITP GSSIKNHVMS ERRRREKLNE MFLILKSVVP SIHKVDKASI LAETIAYLKE  420
LEKRVQELES SSQPSPCPTD QTRRRRCREI TGKKVSAGVK RKASTPEAAG SEDEDTDGEE  480
RHHHRVSNVN VTVMETKEEV LLEVQCQWKE LLMARVFDAI KGVSLDVLSV KASTSHSLLK  540
LKIQAKVSAA AKSSSQQKCS ICLLSLHLYL LAFGVLMLAI LFCSLPALPP SNLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yz6_A3e-23101957192Transcription factor MYC3
4rs9_A3e-23101957192Transcription factor MYC3
4rqw_B3e-23101957192Transcription factor MYC3
4rqw_A3e-23101957192Transcription factor MYC3
4ywc_B3e-231219148227Transcription factor MYC3
4ywc_A3e-231219148227Transcription factor MYC3
4rru_A3e-231219148227Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1380385ERRRRE
2381386RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015692378.10.0PREDICTED: anthocyanin regulatory Lc protein-like isoform X1
SwissprotP135261e-171ARLC_MAIZE; Anthocyanin regulatory Lc protein
TrEMBLJ3M0B40.0J3M0B4_ORYBR; Uncharacterized protein
STRINGOB04G28390.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63650.37e-93bHLH family protein